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run_all: Will run all functions in the qckitfastq suite and save the data frames

and plots to a user-provided directory. Plot names are supplied by default.

Description

Will run all functions in the qckitfastq suite and save the data frames and plots to a user-provided directory. Plot names are supplied by default.

Usage

run_all(infile, dir)

Arguments

Argument Description
infile Path to gzipped FASTQ file
dir Directory to save results to

Value

Generate files from all functions

Examples

r infile <- system.file("extdata", "test.fq.gz", package = "qckitfastq") testfolder <- tempdir() run_all(infile, testfolder)