kmer_count: Return kmer count per sequence for the length of kmer desired
Description
Return kmer count per sequence for the length of kmer desired
Usage
kmer_count(infile, k, output_file = NA)
Arguments
| Argument | Description |
|---|---|
infile |
the object that is the path to gzippped FASTQ file |
k |
the length of kmer |
output_file |
File to save plot to. Default NA. |
Value
kmers counts per sequence
Examples
```r
infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq") km<-kmer_count(infile,k=4) km[1:20,1:10]
```