plot_adapter_content: Creates a bar plot of the top 5 most present adapter sequences.
Description
Creates a bar plot of the top 5 most present adapter sequences.
Usage
plot_adapter_content(ac_sorted, output_file = NA)
Arguments
| Argument | Description |
|---|---|
ac_sorted |
Sorted table of adapters and counts. |
output_file |
File to save data frame to. Default NA. |
Value
Barplot of top 5 most frequent adapter sequences.
Examples
r
if(.Platform$OS.type != "windows") {
infile <- system.file("extdata", "test.fq.gz", package = "qckitfastq")
ac_sorted <- adapter_content(infile)
plot_adapter_content(ac_sorted)
}