Brown CBC's Metagenomics Workshop Materials
Session 1 Fundamental concepts
This will include the overall goal of metagenomics, the types of metagenomics experiments, and considerations for experimental design.
Session 2 Workflows and tools for analysis
This will include workflows and tools for analysis as well as some common pitfalls and how to troubleshoot them.
Workshop Topic Overview
Session 1 Analysis of 16S data using QIIME - Kellyanne Duncan
This will be a short tutorial on the analysis of 16S data using QIIME with an overview of quality filtering and examples of some different aspects of analyses.
Session 2 Analysis of 16S data using DADA2 - Damien Cabral
This will be a short tutorial on the analysis of 16S data using DADA2 that will include DADA2 background and core principles, DADA 2 workflow, and a brief introduction to analysis in Phyloseq.
To access a read-only version of the workshop notebooks (complete with full output), please click the above link; you will be redirected to Jupyter's NBViewer utility. Simply click the name of the notebook and it will be rendered as HTML.
Kellyanne Duncan, Damien Cabral
For assistance, contact email@example.com - this is our general help line, so please specify that your issue is with this site's contents
Original Time and Location
Date: October 2017
Location: Campus Center