About bioflows Tutorials

This section provides an overview of how to run pre-defined workflows using the bioflows package. The tutorials are based on the presumption that the analysis is conducted on the Brown OSCAR compute cluster To use on other systems please check the installation instructions for setting up your environment appropriately. Currently, we provide tutorials for implementing an RNA-seq workflow using the GSNAP RNAseq aligner, Variant Calling with GATK and 16S sequence analysis with QIIME2. This will be updated as new workflows and enhancements are made to the bioflows package.

Note

If you are not sure what the console means or how to login to OSCAR go here.