(cbc_conda_v1) [aragaven@login003 access_genbank]$ python download_genbank_genomes.py -h
usage: download_genbank_genomes.py [-h] [-b BASE_FTP_PATH] [-ad ASSEMBLY_DIR]
[-ft FILE_TYPE_TO_SEARCH]
[-se SPECIES_TO_EXCLUDE] [-c CONCATENATE]
[-o OUTPUT_DIR] [-ol LOG_DIR] [-dr DRY_RUN]
optional arguments:
-h, --help show this help message and exit
-b BASE_FTP_PATH, --base_ftp_path BASE_FTP_PATH
provide the base path for the directories to be
queried
-ad ASSEMBLY_DIR, --assembly_dir ASSEMBLY_DIR
provide the base path for the directories to be
queried
-ft FILE_TYPE_TO_SEARCH, --file_type_to_search FILE_TYPE_TO_SEARCH
provide the base path for the directories to be
queried
-se SPECIES_TO_EXCLUDE, --species_to_exclude SPECIES_TO_EXCLUDE
provide the base path for the directories to be
queried
-c CONCATENATE, --concatenate CONCATENATE
provide the base path for the directories to be
queried
-o OUTPUT_DIR, --output_dir OUTPUT_DIR
provide the base path for the directories to be
queried
-ol LOG_DIR, --log_dir LOG_DIR
provide the base path for the directories to be
queried
-dr DRY_RUN, --dry_run DRY_RUN
provide the base path for the directories to be
queried