run_all: Will run all functions in the qckitfastq suite and save the data frames
and plots to a user-provided directory. Plot names are supplied by default.
Description
Will run all functions in the qckitfastq suite and save the data frames and plots to a user-provided directory. Plot names are supplied by default.
Usage
run_all(infile, dir)
Arguments
| Argument | Description |
|---|---|
infile |
Path to gzipped FASTQ file |
dir |
Directory to save results to |
Value
Generate files from all functions
Examples
r
infile <- system.file("extdata", "test.fq.gz",
package = "qckitfastq")
testfolder <- tempdir()
run_all(infile, testfolder)