plot_per_base_quality: Generate a boxplot of the per position quality score.
Description
Generate a boxplot of the per position quality score.
Usage
plot_per_base_quality(per_base_quality, output_file = NA)
Arguments
| Argument | Description |
|---|---|
per_base_quality |
a data frame of the mean, median and quantiles of sequence quality per base. Most likely generated with the per_base_quality function. |
output_file |
File to save plot to. Will not write to file if NA. Default NA. |
Value
A boxplot of per position quality score distribution.
Examples
```r
pbq <- per_base_quality(system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")) plot_per_base_quality(pbq) ```