gc_per_read: Calculate GC nucleotide sequence content per read of the FASTQ gzipped file
Description
Calculate GC nucleotide sequence content per read of the FASTQ gzipped file
Usage
gc_per_read(infile)
Arguments
| Argument | Description |
|---|---|
infile |
A string giving the path for the fastqfile |
Value
GC content perncentage per read
Examples
r
infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
gc_per_read(infile)[1:10]