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calc_adapter_content: Compute adapter content in reads. This function is only available for macOS/Linux.

Description

Compute adapter content in reads. This function is only available for macOS/Linux.

Usage

calc_adapter_content(infile, adapters)

Arguments

Argument	Description
infile	filepath to fastq sequence
adapters	filepath to adapters

Value

map object with adapter names as the key and the number of times the adapters appears in the reads as the value

Examples

r if(.Platform$OS.type != "windows") { adapter_file <- system.file("extdata", "adapters.txt", package = "qckitfastq") infile <- system.file("extdata", "test.fq.gz", package = "qckitfastq") content <- calc_adapter_content(infile, adapter_file) }